ChIP-Seq peak calling and data analysis in woody plants

  • Wang Lina Northeast Forestry University

Abstract

Chromatin immunoprecipitation (ChIP) followed by highthroughput sequencing (ChIP-Seq) provides an important tool to study genome-wide protein-DNA interactions to help understand gene regulation in the context of native chromatin. A complete ChIP-Seq workflow including peak calling, peak classification, transcription factor binding site overrepresentation and definition of new TFBS motifs. In this paper, ChIP-Seq peak calling and data analysis is described in detail.

Author Biography

Wang Lina, Northeast Forestry University

State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, 51 Hexing
Road, Harbin ,150040, China

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Published
2018-12-29
How to Cite
Lina, W. (2018). ChIP-Seq peak calling and data analysis in woody plants. Journal of Advance Research in Applied Science (ISSN: 2208-2352), 5(12), 11-20. Retrieved from https://jiaats.com/ojs31/index.php/as/article/view/979